Sustainable Development, Dissemination, and Training for Scalable Software Tools for Optical Brain Mapping
openNIMH - National Institute of Mental Health
PROJECT SUMMARY/ABSTRACT
We propose to broadly disseminate and extend intuitive, powerful cloud-based resources for optical brain
mapping that facilitate efficient, accurate, and standardized processing that will harmonize the emerging set of
optical measurement strategies within the growing ecosystem of network level analyses used throughout the
greater brain mapping community. The neuroimaging community faces numerous challenges in data collection,
preprocessing, estimation of brain connectivity, and analyses of relationships between brain connectivity and
behavior. An ever-expanding community of researchers are employing optical methods based on functional near
infrared spectroscopy (fNIRS) in order to infer pathophysiological states of the brain for detection/
characterization of disease or cerebral hemodynamics for understanding human brain health, development, and
aging. Recent developments of high-density diffuse optical tomography (HD-DOT), a silent, flexible, and scalable
technology have demonstrated dramatically improved anatomical specificity and image quality over traditional
fNIRS. Further, recent developments in wearable HD-DOT, even using frequency domain and time resolved
strategies, open the door to unconstrained mapping of naturalistic human brain function with superior image
quality than previously possible. Given the growing worldwide adoption of fNIRS and HD-DOT methods and
further developments of next-generation optical brain mapping methods via the BRAIN Initiative, there is an
urgent and present need for standardized, accessible and flexible tools that directly support workflows from
optical tissue parameter recovery to functional brain mapping to relating variance in brain function to behavior
and outcome. Our team is funded by U24NS136402 to address these needs in the optical brain mapping
community by developing and validating computational tools including NIRFASTer, NeuroDOT, and Network
Level Analyses (NLA), for tissue parameter recovery, optical brain mapping, and model-based connectome-wide
association studies of brain function and behavior, respectively. We address the unmet needs for data resources
with: (1) greater dissemination and training for our tools with detailed documentation, training materials, and
international workshops, (2) cloud deployment of our software to increase scale and accessibility, while easing
the computational burden for the user, and (3) expanded utility of these sustainable, flexible tools to meet the
evolving needs of users at the forefront of optical imaging technology development. This R50 will support a
Research Software Engineer (RSE) to be an established senior RSE through gaining deeper experience
expanding development, maintenance, and dissemination of the U24-supported tools while enhancing her skills
and knowledge of best software engineering practices, FAIR standards, and optical neuroimaging methods, as
well as common and emerging neuroimaging algorithms. This proposal directly supports execution of BRAIN
Initiative goal 7 that seeks to integrate new technological and conceptual approaches to discover how dynamic
patterns of neural activity are transformed into cognition, emotion, perception, and action in health and disease.
Up to $140K
health research